IAMSAM
Filed in: C++
IAMSAM is a forward simulation to test predictions of the Indel Associated Mutation model.
IAMSAM (Indel Associated Mutation with Selfing And the letter M)
IAMSAM posits an infinite-allele indel site linked to a non-recombining infinite-sites SNP locus. Command line parameters are:
R: relative mutation rate for indel hets
F: selfing rate
O: original selfing rate
M: mutations rate per locus at SNPs
I: mutations rate per site at the indel
T: generations to run
Q: generations at which selfing evolves
S: random seed
N: diploid popsize
Download iamsam.cc and compile with "g++ iamsam.cc -o crap -lgsl -lgslcblas -lm" (requires gnu scientific library).
References
Tian et al. 2008 Nature
Hollister et al. 2010
IAMSAM posits an infinite-allele indel site linked to a non-recombining infinite-sites SNP locus. Command line parameters are:
R: relative mutation rate for indel hets
F: selfing rate
O: original selfing rate
M: mutations rate per locus at SNPs
I: mutations rate per site at the indel
T: generations to run
Q: generations at which selfing evolves
S: random seed
N: diploid popsize
Download iamsam.cc and compile with "g++ iamsam.cc -o crap -lgsl -lgslcblas -lm" (requires gnu scientific library).
References
Tian et al. 2008 Nature
Hollister et al. 2010