C++
msstats_fst
A modification of K. Thornton’s msstats program that calculates Weir & Cockerham’s Fst estimator from ms simulations.
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IAMSAM
IAMSAM is a forward simulation to test predictions of the Indel Associated Mutation model. Read More...
msnsam
A modification of Dick Hudson's ms program. Read More...
DiceDist
This program calculates Dice's distance measure among all pairs of individuals from a population, and outputs a triangle distance matrix suitable for use in Neighbor or other phylogeny programs. Read More...
SimDataTBS
Allow reading in the tbs line from ms-output. Read More...
SimDataDip
Files to allow conversion of ms-style output to dominant diploid data. Read More...