analysis
SoFoS
Filed in: Perl
SOFOS allows calculation and rescaling of the site frequency spectrum from polymorphism data. Read More...
Theta Curve
Filed in: Perl
ThetaCurve is a perl script for calculating the a multilocus maximum likelihood value of the per locus Watterson's estimator of the population mutation rate theta. Read More...
RminCutter
Filed in: Perl
RminCutter is a perl script to estimate Hudson & Kaplan's rmin from a standard fasta file, then cut the file into semi-independent regions of sequence with no internal recombination (if you believe that sort of thing). Allows choice of 3 definitions of intervals for output. Read More...