analysis
Rand()m Code

LDit

Filed in: R
Simple R code to plot LD decay and heatmap. Read More...

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eight_zygote

Filed in: R
An analog of the 4-gamete test for dominant genotypic data.
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SITESpipe

Filed in: Perl

Perl scripts to convert and run Jody Hey's SITES program. Read More...

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SoFoS

Filed in: Perl
**SoFoS has moved! Please use the NEW on-line version of SoFoS which can be found here. Please email me if you would like the older perl code referenced below.** Read More...

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Theta Curve

Filed in: Perl
ThetaCurve is a perl script for calculating the a multilocus maximum likelihood value of the per locus Watterson's estimator of the population mutation rate theta. Read More...

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RminCutter

Filed in: Perl
RminCutter is a perl script to estimate Hudson & Kaplan's rmin from a standard fasta file, then cut the file into semi-independent regions of sequence with no internal recombination (if you believe that sort of thing). Allows choice of 3 definitions of intervals for output. Read More...

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