libsequence
Rand()m Code

HBK_permute

Filed in: C++
A modification of the HBKpermute program from K. Thornton’s analysis package.
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msstats_fst

Filed in: C++
A modification of K. Thornton’s msstats program that calculates Weir & Cockerham’s Fst estimator from ms simulations.
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SoFoS

Filed in: Perl
SOFOS allows calculation and rescaling of the site frequency spectrum from polymorphism data. Read More...

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DiceDist

Filed in: C++
This program calculates Dice's distance measure among all pairs of individuals from a population, and outputs a triangle distance matrix suitable for use in Neighbor or other phylogeny programs. Read More...

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SimDataTBS

Filed in: C++
Allow reading in the tbs line from ms-output. Read More...

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SimDataDip

Filed in: C++
Files to allow conversion of ms-style output to dominant diploid data. Read More...

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