2010
Eckert, A.J., J. van Heerwaarden, J.L. Wegrzyn, C.D. Nelson, J. Ross-Ibarra, S.C. González-Martínez, and D.B. Neale. 2010. Patterns of population structure and environmental associations with aridity across the range of loblolly pine (Pinus taeda L, Pinaceae). Genetics 185:969-982
Shi, J., S.E. Wolf, J.M. Burke, G.G. Presting, J. Ross-Ibarra, R.K. Dawe. 2010. Widespread gene conversion in centromere cores. PLoS Biology 8: e1000327
van Heerwaarden, J., J. Ross-Ibarra, J. Doebley, J.C. Glaubitz, J. Sánchez González, B.S. Gaut, and L.E. Eguiarte. 2010. Fine scale genetic structure in the wild ancestor of maize (Zea mays ssp. parviglumis). Molecular Ecology 19: 1162-1173
Whitney, K.D., E.J. Baack, J.L. Hamrick, M.J.W. Godt, B.C. Barringer, M.D. Bennet, C.G. Eckert, C. Goodwillie, S. Kalisz, I. Leitch, and J. Ross-Ibarra. 2010. A role for nonadaptive processes in plant genome size evolution? Evolution 64:2097-2109
Fuchs E.J., J. Ross-Ibarra, G. Barrantes. 2010. Reproductive biology of Macleania rupestris (Ericaceae) a pollen limited Neotropical cloud forest species in Costa Rica. Journal of Tropical Ecology 26: 351-354
van Heerwaarden, J., F.A. van Eeuwijk, and J. Ross-Ibarra. 2010. Genetic diversity in a crop metapopulation. Heredity 104: 28-39
Hollister, J.D., J. Ross-Ibarra, B.S. Gaut. 2010. Indel-associated mutation rate varies with mating system in flowering plants. Molecular Biology and Evolution 27: 409-416
2009
May, M.R., M. Provance, A. Sanders, N. Ellstrand, and J. Ross-Ibarra. 2009. A Pleistocene clone of Palmer's Oak persisting in Southern California. PLoS ONE 4: e8346
Gore, M.A., J.-M. Chia, R.J. Elshire, Q. Sun, E.S. Ersoz, B.L. Hurwitz, J.A. Peiffer, M. McMullen, G.S. Grills, J. Ross-Ibarra, D.H. Ware, E.S. Buckler. 2009. A first generation haplotype of maize. Science 326: 1115-1117.
Ross-Ibarra, J., M. Tenaillon, and B.S. Gaut. 2009. Historical divergence in the genus Zea. Genetics 181: 1399-1413
Zhang, L-B., Q. Zhu, Z-Q. Wu, J. Ross-Ibarra, B.S. Gaut, S. Ge, and T. Sang. 2009. Selection on grain shattering genes and rates of rice domestication. New Phytologist 184: 708-720
2008
Ross-Ibarra J., S.I. Wright, J.P. Foxe, A. Kawabe, L. DeRose-Wilson, G. Gos, D. Charlesworth, B.S. Gaut. 2008. Patterns of polymorphism and demographic history in natural populations of Arabidopsis lyrata. PLoS ONE 3: e2411.
Ross-Ibarra, J. and B.S. Gaut. 2008. Multiple domestications do not appear monophyletic (Letter). PNAS 105: E105
Lockton, S., J. Ross-Ibarra, and B.S. Gaut. 2008. Demography and weak selection drive patterns of transposable element diversity in natural populations of Arabidopsis lyrata. PNAS 105: 13965–13970
Gaut, B.S., and J. Ross-Ibarra. 2008. Selection on major components of Angiosperm genomes. Science 320: 484-486
2007
Ross-Ibarra, J. 2007. Genome size and recombination in Angiosperms: a second look. J. Evol. Biol. 20:800-806
Ross-Ibarra, J., P.L. Morrell, and B.S. Gaut. 2007. Plant domestication: a unique opportunity to identify the genetic basis of adaptation. PNAS 104: 8641-8648.
2006
Wares, J., P. Barber, J. Ross-Ibarra, R. Toonen, and E. Sotka. 2006. Mitochondrial DNA and Population Size (Letter). Science 314: 1388-1389
2005
Ross-Ibarra, J. 2005. QTL Mapping and the study of plant domestication. Genetica 123:197-204
2004
Ross-Ibarra, J. 2004. Evolution of recombination under domestication: a test of two hypotheses. American Naturalist 163:105-112
2003
Ross-Ibarra, J. 2003. Origen y domesticacion de la chaya (Cnidoscolus aconitifolius Mill. I.M. Johnst.): la espinaca Maya. Mexican Studies/Estudios Mexicanos 19: 287-302
2002
Ross-Ibarra, J., and A. Molina Cruz. 2002. The ethnobotany of chaya (Cnidoscolus aconitifolius ssp. aconitifolius Breckon): a nutritious Maya vegetable. Economic Botany 56: 350-365
2001
Neel, M.C., J. Ross-Ibarra, and N.C. Ellstrand. 2001. Implications of mating patterns for conservation of the endangered plant Eriogonum ovalifolium var. vineum (Polygonaceae). American Journal of Botany 88:1214-1222