Whitney and Garland 2010

FOUR, yes count’em FOUR articles on domestication competing for the title prize. Dog vs. silkworm vs. maize vs. chicken. Now accepting wagers... Read More...

Tags: JRI, Maize, chicken, dog, silkworm

Platt et al. 2010

Fri Jun 18 2010 Filed in: population genetics

The Scale of Population Structure in Arabidopsis thaliana

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Tags: structure, Arabidopsis, JRI

Michel et al. 2010

Fri Jun 04 2010 Filed in: population genetics

Widespread genomic divergence during sympatric speciation
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Tags: speciation, JRI

Rubin et al. 2010 AND Pool et al. 2010

Fri Apr 23 2010 Filed in: domestication | population genetics

Whole-genome resequencing reveals loci under selection during chicken domestication

AND

Population genetic inference from genomic sequence variation
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Tags: chicken, adaptation, genome scan, review, JRI, MH

Gossmann et al. 2010

Fri May 14 2010 Filed in: population genetics

Genome wide analyses reveal little evidence for adaptive evolution in many plant species
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Tags: adaptation, JRI

Buckler et al. 1999

Fri Apr 30 2010 Filed in: population genetics

Meiotic Drive of Chromosomal Knobs Reshaped the Maize Genome
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Tags: Maize, centromeres, JRI

Slotte et al 2010

Fri Apr 09 2010 Filed in: population genetics

Genome-wide evidence for efficient positive and purifying selection in Capsella grandiflora, a plant species with a large effective population size Read More...

Tags: JRI, adaptation

Ingvarsson 2010

Fri Mar 05 2010 Filed in: population genetics

Natural Selection on Synonymous and Nonsynonymous Mutations Shapes Patterns of Polymorphism in Populus tremula
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Tags: Methods, sweeps, populus, JRI

Yamagata et al 2010

Fri Feb 19 2010 Filed in: evolution

Mitochondrial gene in the nuclear genome induces reproductive barrier in rice
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Tags: rice, JRI, speciation

Huff et al. 2010

Fri Feb 12 2010 Filed in: population genetics

Mobile elements reveal small population size in the ancient ancestors of Homo sapiens
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Tags: TEs, JRI, human

Bensasson et al. 2009

Fri Jan 29 2010 Filed in: population genetics

Rapid Evolution of Yeast Centromeres in the Absence of Drive
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Tags: centromeres, yeast, JRI

Kim & Gulisija 2009

Fri Jan 22 2010 Filed in: population genetics | domestication

Signatures of Recent Directional Selection Under Different Models of Population Expansion During Colonization of New Selective Environments Read More...

Tags: Modeling, demographic water, JRI

Wolfgruber et al. 2009

Fri Jun 12 2009 Filed in: evolution

Maize Centromere Structure and Evolution: Sequence Analysis of Centromeres 2 and 5 Reveals Dynamic Loci Shaped Primarily by Retrotransposons
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Tags: centromeres, genomics, JRI

Ayroles et al. 2009

Fri Dec 11 2009 Filed in: quantitative genetics

Systems genetics of complex traits in Drosophila melanogaster Read More...

Tags: JRI, networks

Nielsen et al. 2005

Fri Oct 16 2009 Filed in: population genetics

Genomic scans for selective sweeps using SNP data
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Tags: Methods, human, JRI, sweeps, genome scan

Kovach et al. 2009

Fri Sep 25 2009 Filed in: population genetics | domestication

The origin and evolution of fragrance in rice (Oryza sativa L.) Read More...

Tags: JRI, rice

Gilad et al. 2009

Tue Oct 06 2009 Filed in: population genetics

Characterizing natural variation using next-generation sequencing technologies.
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Tags: review, Methods, JRI, genomics

Shih et al. 2010

Fri Sep 11 2009 Filed in: population genetics

High frequency gene conversion in centromere cores Read More...

Tags: centromeres, JRI, Maize

Sella et al. 2009

Tue Sep 29 2009 Filed in: population genetics

Pervasive Natural Selection in the Drosophila Genome?
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Tags: JRI, adaptation, Drosophila

Slatkin 2008

Tue Sep 22 2009 Filed in: population genetics

Linkage disequilibrium — understanding the evolutionary past and mapping the medical future
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Tags: primer, review, JRI

Orr 2009

Tue Sep 08 2009 Filed in: evolution

Fitness and its role in evolutionary genetics
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Tags: JRI, review, primer

Charlesworth 2009

Tue Sep 01 2009 Filed in: population genetics

Effective population size and patterns of molecular evolution and variation
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Tags: JRI, primer, review

Holsinger and Weir

Tue Aug 25 2009 Filed in: population genetics

Genetics in geographically structured populations: defining, estimating and interpreting FST
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Tags: review, structure, JRI, primer

Buckler/McMullen & McMullen/Buckler

Fri Aug 28 2009 Filed in: quantitative genetics

The Genetic Architecture of Maize Flowering Time and Genetic Properties of the Maize Nested Association Mapping Population Read More...

Tags: association, JRI, Maize

Fishman and Saunders 2009

Fri Aug 21 2009 Filed in: evolution | quantitative genetics

Centromere-Associated Female Meiotic Drive Entails Male Fitness Costs in Monkeyflowers Read More...

Tags: centromeres, JRI

Jones and Wakeley 2009

Tue Aug 18 2009 Filed in: population genetics

The Influence of Gene Conversion on Linkage Disequilibrium Around a Selective Sweep Read More...

Tags: sweeps, JRI

Harismendy et al. 2009

Tue Aug 11 2009 Filed in: population genetics

Evaluation of next generation sequencing platforms for population targeted sequencing studies
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Tags: JRI, Methods

Städler et al 2009

Fri Aug 14 2009 Filed in: population genetics

The Impact of Sampling Schemes on the Site Frequency Spectrum in Nonequilibrium Subdivided Populations
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Tags: JRI, Methods

Zhang et al. 2009

Tue Aug 04 2009 Filed in: population genetics | domestication

Selection on grain shattering genes and rates of rice domestication Read More...

Tags: JRI, rice, ABC

McNally et al. 2009

Tue Jul 28 2009 Filed in: population genetics

Genomewide SNP variation reveals relationships among landraces and modern varieties of rice Read More...

Tags: JRI, structure, rice

Chiang et al. 2009

Fri Jul 24 2009 Filed in: evolution | molecular genetics

Major flowering time gene, FLOWERING LOCUS C, regulates seed germination in Arabidopsis thaliana Read More...

Tags: JRI, Arabidopsis

Price et al. 2009

Tue Jul 07 2009 Filed in: population genetics

Sensitive Detection of Chromosomal Segments of Distinct Ancestry in Admixed Populations
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Tags: structure, JRI, human, Methods

Gore et al. 2009

Tue Jun 30 2009 Filed in: population genetics | domestication

A first generation haplotype map of maize Read More...

Tags: association, Maize, JRI, genomics

Coop et al. 2009

Fri Jul 03 2009 Filed in: population genetics

The Role of Geography in Human Adaptation
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Tags: structure, JRI, human, adaptation

Jensen et al. 2008

Fri Jun 05 2009 Filed in: population genetics

An Approximate Bayesian Estimator Suggests Strong, Recurrent Selective Sweeps in Drosophila
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Tags: JRI, ABC, sweeps

Tishkoff et al. 2009

Fri May 29 2009 Filed in: population genetics

The Genetic Structure and History of Africans and African Americans Read More...

Tags: JRI, structure, human

Joyce and Marjoram 2008

Fri May 22 2009 Filed in: population genetics

Approximately sufficient statistics and bayesian computation.
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Tags: ABC, JRI, Modeling, Methods

Flint and Mackay 2009

Fri May 15 2009 Filed in: quantitative genetics

Genetic architecture of quantitative traits in mice, flies, and humans
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Tags: review, JRI, Drosophila, human

Nosil 2009

Tue Apr 14 2009 Filed in: population genetics

ADAPTIVE POPULATION DIVERGENCE IN CRYPTIC COLOR-PATTERN FOLLOWING A REDUCTION IN GENE FLOW
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Tags: JRI, adaptation, speciation

Maron et al. 2009

Wed Apr 01 2009 Filed in: population genetics

Clinical Outcome and Phenotypic Expression in LAMP2 Cardiomyopath Read More...

Tags: JRI, phylogenetics

Hyten et al. 2006

Tue Mar 31 2009 Filed in: domestication | population genetics

Impacts of genetic bottlenecks on soybean genome diversity
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Tags: JRI, demographic water

Wang et al. 2009

Tue Mar 24 2009 Filed in: population genetics | domestication

SNP deserts of Asian cultivated rice: genomic regions under domestication Read More...

Tags: JRI, rice, genome scan

Paterson et al. 2009

Tue Mar 17 2009 Filed in: population genetics | domestication

The Sorghum bicolor genome and the diversification of grasses Read More...

Tags: JRI, genomics

Kim et al. 2008

Mon Mar 09 2009 Filed in: population genetics

Regulatory Genes Control a Key Morphological and Ecological Trait Transferred Between Species
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Tags: JRI, speciation

Moyle et al. 2009

Mon Feb 23 2009 Filed in: evolution

Explosive Pleistocene diversification and hemispheric expansion of a “great speciator”

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Tags: JRI, speciation, phylogenetics

Bouchez et al. 2002

Tue Feb 10 2009 Filed in: quantitative genetics

Marker-Assisted Introgression of Favorable Alleles at Quantitative Trait Loci Between Maize Elite Lines Read More...

Tags: JRI, Maize, association

Bilkard et al 2009

Mon Feb 09 2009 Filed in: population genetics

Divergent Evolution of Duplicate Genes Leads to Genetic Incompatibilities Within A. thaliana Read More...

Tags: JRI, speciation, Arabidopsis

Cartwright 2009

Thu Feb 05 2009 Filed in: population genetics

Antagonism between local dispersal and self-incompatibility systems in a continuous plant population

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Tags: JRI, structure

Briggs et al. 2007

Tue Feb 03 2009 Filed in: quantitative genetics | domestication

Linkage Mapping of Domestication Loci in a Large Maize–Teosinte Backcross Resource
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Tags: JRI, Maize, association

Vigouroux et al. 2008

Thu Jan 29 2009 Filed in: population genetics

Population structure and genetic diversity of New World maize races assessed by DNA microsatellites
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Tags: JRI, Maize, structure, phylogeography

Saishho and Purugganan 2007

Tue Jan 27 2009 Filed in: domestication

Molecular Phylogeography of Domesticated Barley Traces Expansion of Agriculture in the Old World Read More...

Tags: JRI, phylogeography

Felsenstein 1985

Mon Jan 26 2009 Filed in: evolution

Phylogenies and the Comparative Method
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Tags: JRI, phylogenetics, theory, Methods

Foll and Gaggiotti 2008

Thu Jan 22 2009 Filed in: population genetics

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective
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Tags: JRI, structure, genome scan, Methods

Namroud et al. 2008

Tue Jan 20 2009 Filed in: population genetics

Scanning the genome for gene single nucleotide polymorphisms involved in adaptive population differentiation in white spruce
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Tags: JRI, genome scan, adaptation

Miller et al. 2004

Mon Jan 12 2009 Filed in: population genetics

Sequencing the nuclear genome of the extinct woolly mammoth Read More...

Tags: JRI, aDNA, genomics

Weber et al. 2008

Thu Jan 08 2009 Filed in: quantitative genetics

The Genetic Architecture of Complex Traits in Teosinte (Zea mays ssp. parviglumis): New Evidence From Association Mapping
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Tags: JRI, Maize

Ma et al. 2006

Mon Dec 01 2008 Filed in: population genetics

Genetic Structure and Evolutionary History of a Diploid Hybrid Pine Pinus densata Inferred from the Nucleotide Variation at Seven Gene Loci Read More...

Tags: JRI, speciation

Sjodin et al 2005

Mon Nov 17 2008 Filed in: population genetics

On the meaning and existence of an effective population size
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Tags: JRI, theory

Peters 2008

Mon Nov 10 2008 Filed in: evolution

Environmental determinants of extinction selectivity in the fossil record
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Tags: extinction, JRI, fossils

Organ et al 2007

Mon Nov 03 2008 Filed in: evolution

Origin of avian genome size and structure in non-avian dinosaurs

Raff 2007

Mon Oct 20 2008 Filed in: evolution

Written in stone: fossils, genes and evo–devo
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Tags: phylogenetics, review, JRI, fossils

Axelsson et al. 2008

Mon Oct 06 2008 Filed in: population genetics

The Effect of Ancient DNA Damage on Inferences of Demographic Histories Read More...

Tags: Modeling, JRI, aDNA

Ross-Ibarra Lab