Hinch et al. 2011

The landscape of recombination in African Americans
Abstract

Brown et al. 2011

Distinct Genetic Architectures for Male and Female Inflorescence Traits of MaizeAbstract

Qiu et al. 2011

Reduced efficacy of natural selection on codon usage bias in selfing Arabidopsis and Capsella species
Abstract

Bouffaud et al. 2011

Is diversification history of maize influencing selection of soil bacteria by roots?
Abstract

Happy New Year (NO REHAB)

Eichten et al. 2011

Heritable Epigenetic Variation among Maize Inbreds
Abstract

Smith et al. 2011

Comparative Phylogeography of a Coevolved Community: Concerted Population Expansions in Joshua Trees and Four Yucca MothsAbstract

Alkan et al. 2011

Genome structural variation discovery and genotyping
Abstract

Rushworth et al. 2011

Boechera, a model system for ecological genomicsAbstract

No REHAB

No REHAB — but follow the link for your 2011 Turkey genetics articleAbstract

Mendiburo et al. 2011

Drosophila CENH3 Is Sufficient for Centromere Formation
Abstract

Lowry and Willis 2010

A Widespread Chromosomal Inversion Polymorphism Contributes to a Major Life-History Transition, Local Adaptation, and Reproductive IsolationAbstract

Lohmueller et al. 2011

Natural Selection Affects Multiple Aspects of Genetic Variation at Putatively Neutral Sites across the Human Genome
Abstract

Li et al. 2011

Joint analysis of demography and selection in population genetics: where do we stand and where could we go?
Abstract

Yang and Gaut 2011

Factors that contribute to variation in evolutionary rate among Arabidopsis genes
Abstract

Hancock/Fournier-Level 2011

An Arabdopsis local adaptation double editionAbstract

Charlesworth and Willis 2009

The genetics of inbreeding depression
Abstract

Ellison et al. 2011

Population genomics and local adaptation in wild isolates of a model microbial eukaryote
Abstract

Cao/Gan 2011

An Arabidopsis genome special double-edition

Abstract

Jensen and Bachtrog 2011

Characterizing the Influence of Effective Population Size on the Rate of Adaptation: Gillespie’s Darwin DomainAbstract

Takuno and Gaut 2011

Body-methylated genes in Arabidopsis thaliana are functionally important and evolve slowly
Abstract

He et al. 2011

Two Evolutionary Histories in the Genome of Rice: the Roles of Domestication Genes
Abstract

REHAB cancelled

Mariac et al. 2011

Genetic basis of pearl millet adaptation along an environmental gradient investigated by a combination of genome scan and association mapping
Abstract

Feder et al. 2011

Adaptive chromosomal divergence driven by mixed geographic mode of evolution
Abstract

Yotova et al. 2011

An X-linked haplotype of Neandertal origin is present among all non-African populations
Abstract

Li et al. 2011

Chromosome Size in Diploid Eukaryotic Species Centers on the Average Length with a Conserved Boundary

Abstract

Li & Durbin 2011

Inference of human population history from individual whole-genome sequences
Abstract

Novembre(s) 2008

Interpreting principal component analyses of spatial population genetic variation

AND

Genes mirror geography within Europe
Abstract

Price et al. 2009

Sensitive Detection of Chromosomal Segments of Distinct Ancestry in Admixed Populations
Abstract

Salome et al. 2011

Genetic Architecture of Flowering-Time Variation in Arabidopsis thaliana
Abstract

Turner et al. 2011


Population-Based Resequencing of Experimentally Evolved Populations Reveals the Genetic Basis of Body Size Variation in Drosophila melanogaster
Abstract

McEvoy et al. 2011

Human population dispersal ''Out of Africa'' estimated from linkage disequilibrium and allele frequencies of SNPs
Abstract

Buckler et al. 2006

PHYLOGEOGRAPHY OF THE WILD SUBSPECIES OF ZEA MAYS
Abstract

Kim To et al. 2011

Arabidopsis HDA6 Regulates Locus-Directed Heterochromatin Silencing in Cooperation with MET1
Abstract

Hancock et al. 2011

Adaptations to Climate-Mediated Selective Pressures in HumansAbstract

Moorjani et al. 2011

The History of African Gene Flow into Southern Europeans, Levantines, and Jews
Abstract

Hu et al. 2011

The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
Abstract

Sattath et al. 2011

Pervasive Adaptive Protein Evolution Apparent in Diversity Patterns around Amino Acid Substitutions in Drosophila simulansAbstract

Warnefors & Eyre-Walker 2011

The accumulation of gene regulation through time
Abstract

Prunier et al. 2011

Scanning the genome for gene SNPs related to climate adaptation and estimating selection at the molecular level in boreal black spruceAbstract

Woods et al. 2011

Second-Order Selection for Evolvability in a Large Escherichia coli Population
Abstract

Brito & Edwards 2009

Multilocus phylogeography and phylogenetics using sequence-based markers
Abstract

Moses and Durbin 2009

Inferring Selection on Amino Acid Preference in Protein Domains
Abstract

Hernandez et al. 2011

Classic Selective Sweeps Were Rare in Recent Human Evolution
Abstract

Maize Meeting: No REHAB

Loh et al. 2011

Evolution of MicroRNAs and the Diversification of Species
Abstract

Du et al. 2010

DNA Binding of Centromere Protein C (CENPC) Is Stabilized by Single-Stranded RNA
Abstract

Wright on time

Two papers to prepare for S. Wright’s visit on Feb. 28:

Foxe et al. 2010

Reconstructing origins of loss of self-incompatibility and selfing in north american Arabidopsis lyrata: a population genetic context

Siol et al. 2010

The population genomics of plant adaptation
Abstract

Casto and Feldman 2011

Genome-Wide Association Study SNPs in the Human Genome Diversity Project Populations: Does Selection Affect Unlinked SNPs with Shared Trait Associations?Abstract

Goff 2010

A unifying theory for general multigenic heterosis: energy efficiency, protein metabolism, and implications for molecular breedingAbstract

Chun and Fay 2009

Identification of deleterious mutations within three human genomes
Abstract

Chen et al. 2010

New Genes in Drosophila Quickly Become Essential
Abstract

Li and Chetelat 2010

A Pollen Factor Linking Inter- and Intraspecific Pollen Rejection in TomatoAbstract

Reich et al. 2010

Genetic history of an archaic hominin group from Denisova Cave in Siberia
Abstract

Renaut et al. 2010

SNP signatures of selection on standing genetic variation and their association with adaptive phenotypes along gradients of ecological speciation in lake whitefish species pairs (Coregonus spp.)Abstract

Kim et al. 2010

Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb.
and Zucc.) genome
Abstract

Ma et al. 2010

Genetic Differentiation, Clinal Variation and Phenotypic Associations With Growth Cessation Across the Populus tremula Photoperiodic Pathway
Abstract

Hufford et al. In Prep

The domestication and improvement of maize: full-genome re-sequencing of teosinte, landraces, and inbred lines of maize.Abstract

Dalloul et al. 2010

NO REHAB on Friday 11/26... But in honor of Turkey Day:

Multi-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis
Abstract

Wright et al. 2010

The genetic architecture of domestication in the chicken: effects of pleiotropy and linkage
Abstract

Rockman et al. 2010

Selection at Linked Sites Shapes Heritable Phenotypic Variation in C. elegans

AND (optionally)

Charlesworth 2009 Effective reading on effective size

Charlesworth 2010 Background reading on background selectionAbstract

Sackton et al. 2009

Population Genomic Inferences from Sparse High-Throughput Sequencing
of Two Populations of Drosophila melanogaster
Abstract

Bigham et al. 2010 & Yi et al. 2010

Identifying Signatures of Natural Selection in Tibetan and Andean Populations Using Dense Genome Scan Data

AND

Sequencing of 50 Human Exomes Reveals Adaptation to High Altitude
Abstract

Ralph and Coop 2010

Parallel Adaptation: One or Many Waves of Advance of an Advantageous Allele?


Abstract

Elyashiv et al. 2010

Shifts in the intensity of purifying selection: An analysis of genome-wide polymorphism data from two closely related yeast species
Abstract

Boyko et al. 2010

A Simple Genetic Architecture Underlies Morphological Variation in Dogs
Abstract

Rieseberg and Blackman 2010

Speciation genes in plants.
Abstract

Barrett and Schluter 2008 & Durand et al. 2010

Adaptation from standing genetic variation

and

Standing variation and new mutations both contribute to a fast response to selection for flowering time in maize inbredsAbstract

Rosas et al 2010

Cryptic Variation between Species and the Basis of Hybrid Performance
Abstract

Whitney and Garland 2010

Did Genetic Drift Drive Increases in Genome Complexity?
Abstract

North et al. 2010

LOCAL ADAPTATION IN A CHANGING WORLD: THE ROLES OF GENE-FLOW, MUTATION, AND SEXUAL REPRODUCTION

Abstract

Schmidt et al. 2010

Copy Number Variation and Transposable Elements Feature in Recent, Ongoing Adaptation at the Cyp6g1 Locus
Abstract

Gross et al. 2010 & Thurber et al. 2010

Molecular evolution of shattering loci in U.S. weedy rice

AND

Seeing red: the origin of grain pigmentation in US weedy riceAbstract

Woodhouse et al. 2010

Following Tetraploidy in Maize, a Short Deletion Mechanism Removed Genes Preferentially from One of the Two Homeologs
Abstract

Coate and Doyle 2010

Quantifying Whole Transcriptome Size, a Prerequisite for Understanding Transcriptome Evolution Across Species: An Example from a Plant Allopolyploid
Abstract

Slotte et al. 2010 & Gossman et al. 2010 reprise

Genome-Wide Evidence for Efficient Positive and Purifying Selection in Capsella grandiflora, a Plant Species with a Large Effective Population Size

and Gossman et al. 2010 (at least read the discussion)Abstract

Bierne 2010

The distinctive footprints of local hitchhiking in a varied environment and global hitchhiking in a subdivided population
Abstract

Yang et al. 2010

Common SNPs explain a large proportion of the heritability for human height
Abstract

Karasov et al. 2010

Evidence that Adaptation in Drosophila Is Not Limited by Mutation at Single Sites
Abstract

Albrechtsen et al. 2010

Ascertainment biases in SNP chips affect measures of population divergence
Abstract

Zheng and Ge 2010

Ecological divergence in the presence of gene flow in two closely related Oryza species (Oryza rufipogon and O. nivara)
Abstract

Platt et al. 2010

The Scale of Population Structure in Arabidopsis thaliana

Abstract

Domestication showcase showdown


FOUR, yes count’em FOUR articles on domestication competing for the title prize. Dog vs. silkworm vs. maize vs. chicken. Now accepting wagers...Abstract

Michel et al. 2010

Widespread genomic divergence during sympatric speciation
Abstract

(Charlesworth) 2010

A pot-luck of CharlesworthAbstract

González et al. 2010

Genome-Wide Patterns of Adaptation to Temperate Environments Associated with Transposable Elements in Drosophila
Abstract

Gossmann et al. 2010

Genome wide analyses reveal little evidence for adaptive evolution in many plant species
Abstract

Heled and Drummond 2010

Bayesian Inference of Species Trees from Multilocus Data
Abstract

Buckler et al. 1999

Meiotic Drive of Chromosomal Knobs Reshaped the Maize Genome
Abstract

Rubin et al. 2010 & Pool et al. 2010

Whole-genome resequencing reveals loci under selection during chicken domestication

AND

Population genetic inference from genomic sequence variation
Abstract

Ness et al. 2010

Mating-System Variation, Demographic History and Patterns of Nucleotide Diversity in the Tristylous Plant Eichhornia paniculata
Abstract

Slotte et al 2010

Genome-wide evidence for efficient positive and purifying selection in Capsella grandiflora, a plant species with a large effective population sizeAbstract

Jakob et al 2010

Population demography influences climatic niche evolution: evidence from diploid American Hordeum species (Poaceae)
Abstract

Lusk and Eisen 2010

Evolutionary Mirages: Selection on Binding Site Composition Creates the Illusion of Conserved Grammars in Drosophila Enhancers
Abstract

Ingvarsson 2010

Natural Selection on Synonymous and Nonsynonymous Mutations Shapes Patterns of Polymorphism in Populus tremula
Abstract

Lee et al. 2010

Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana
Abstract

Yamagata et al 2010

Mitochondrial gene in the nuclear genome induces reproductive barrier in rice
Abstract

Huff et al. 2010

Mobile elements reveal small population size in the ancient ancestors of Homo sapiens
Abstract

Wasser et al. 2004

Assigning African elephant DNA to geographic region of origin: Applications to the ivory trade
Abstract

Bensasson et al. 2009

Rapid Evolution of Yeast Centromeres in the Absence of Drive
Abstract

Kim and Gulisija 2009

Signatures of Recent Directional Selection Under Different Models of Population Expansion During Colonization of New Selective EnvironmentsAbstract

Kebrom and Brutnell 2007 & Clark et al. 2006

The molecular analysis of the shade avoidance syndrome in the grasses has begun.

AND

A distant upstream enhancer at the maize domestication gene tb1 has pleiotropic effects on plant and inflorescent architecture.
Abstract

Obbard et al. 2009

Quantifying Adaptive Evolution in the Drosophila Immune System
Abstract

Ayroles et al. 2009

Systems genetics of complex traits in Drosophila melanogasterAbstract

Latta 2009

Testing for local adaptation in Avena barbata: a classic example of ecotypic divergence

Abstract

Qiu et al. 2006

The deepest divergences in land plants inferred from phylogenomic evidence
Abstract

Wolf et al. 2009

Nonlinear Dynamics of Nonsynonymous (dN) and Synonymous (dS) Substitution Rates Affects Inference of Selection
Abstract

Barrick et al. 2009

Genome evolution and adaptation in a long-term experiment with Escherichia coli
Abstract

Gutenkunst et al. 2009

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data
Abstract

Stolzfus and Yampolsky 2009 & Nielsen 2009

Climbing Mount Probable: Mutation as a Cause of Nonrandomness in Evolution

AND

ADAPTIONISM—30 YEARS AFTER GOULD AND LEWONTINAbstract

Nielsen et al. 2005

Genomic scans for selective sweeps using SNP data
Abstract

Turner et al. 2008

Genomic Analysis of Differentiation between Soil Types Reveals Candidate Genes for Local Adaptation in Arabidopsis lyrataAbstract

Gilad et al. 2009

Characterizing natural variation using next-generation sequencing technologies.
Abstract

Piperno et al 2009 & Ranere et al. 2009

Starch grain and phytolith evidence for early ninth millennium B.P. maize from the Central Balsas River Valley, Mexico

AND

The cultural and chronological context of early Holocene maize and squash domestication in the Central Balsas River Valley, MexicoAbstract

Sella et al. 2009

Pervasive Natural Selection in the Drosophila Genome?
Abstract

Kovach et al. 2009

The origin and evolution of fragrance in rice (Oryza sativa L.)Abstract

Slatkin 2008

Linkage disequilibrium — understanding the evolutionary past and mapping the medical future
Abstract

Itan et al. 2009

The Origins of Lactase Persistence in Europe
Abstract

Shih et al. 2010

High frequency gene conversion in centromere coresAbstract

Orr 2009

Fitness and its role in evolutionary genetics
Abstract

Eyre-Walker and Keightley 2009

Estimating the Rate of Adaptive Molecular Evolution in the Presence of Slightly Deleterious Mutations and Population Size Change
Abstract

Charlesworth 2009

Effective population size and patterns of molecular evolution and variation
Abstract

Buckler/McMullen & McMullen/Buckler

The Genetic Architecture of Maize Flowering Time and Genetic Properties of the Maize Nested Association Mapping PopulationAbstract

Holsinger and Weir

Genetics in geographically structured populations: defining, estimating and interpreting FST
Abstract

Fishman and Saunders 2009

Centromere-Associated Female Meiotic Drive Entails Male Fitness Costs in MonkeyflowersAbstract

Jones and Wakeley 2009

The Influence of Gene Conversion on Linkage Disequilibrium Around a Selective SweepAbstract

Städler et al 2009

The Impact of Sampling Schemes on the Site Frequency Spectrum in Nonequilibrium Subdivided Populations
Abstract

Harismendy et al. 2009

Evaluation of next generation sequencing platforms for population targeted sequencing studies
Abstract

Hahn 2008

TOWARD A SELECTION THEORY OF MOLECULAR EVOLUTION
Abstract

Zhang et al. 2009

Selection on grain shattering genes and rates of rice domestication Abstract

Schneider et al. 2009

Estimates of Positive Darwinian Selection Are Inflated by Errors in Sequencing, Annotation, and Alignment
Abstract

McNally et al. 2009

Genomewide SNP variation reveals relationships among landraces and modern varieties of riceAbstract

Chiang et al. 2009

Major flowering time gene, FLOWERING LOCUS C, regulates seed germination in Arabidopsis thalianaAbstract

van Heerwaarden et al. 2010

Fine scale genetic structure in the wild ancestor of maize (Zea mays spp. Parviglumis)
Abstract

Guillot 2009

On the inference of spatial structure from population genetics data
Abstract

de-Lucas et al. 2008

Mating system and pollen gene flow in Mediterranean maritime pine Abstract

Price et al. 2009

Sensitive Detection of Chromosomal Segments of Distinct Ancestry in Admixed Populations
Abstract

Coop et al. 2009

The Role of Geography in Human Adaptation
Abstract

Gore et al. 2009

A first generation haplotype map of maizeAbstract

Templeton 2009

Statistical hypothesis testing in intraspecific phylogeography: nested clade phylogeographical analysis vs. approximate Bayesian computation

Abstract

Marshall et al. 2009

Glacial refugia in a maritime temperate climate: Cicada (Kikihia subalpina) mtDNA phylogeography in New ZealandAbstract

Wolfgruber et al. 2009

Maize Centromere Structure and Evolution: Sequence Analysis of Centromeres 2 and 5 Reveals Dynamic Loci Shaped Primarily by Retrotransposons
Abstract

Jensen et al. 2008

An Approximate Bayesian Estimator Suggests Strong, Recurrent Selective Sweeps in Drosophila
Abstract

Tishkoff et al. 2009

The Genetic Structure and History of Africans and African AmericansAbstract

Joyce and Marjoram 2008

Approximately sufficient statistics and bayesian computation.
Abstract

Flint and Mackay 2009

Genetic architecture of quantitative traits in mice, flies, and humans
Abstract

Nosil 2009

ADAPTIVE POPULATION DIVERGENCE IN CRYPTIC COLOR-PATTERN FOLLOWING A REDUCTION IN GENE FLOW
Abstract

Zardoya and Meyer 1998

Complete mitochondrial genome suggests diapsid affinities of turtlesAbstract

Maron et al. 2009

Clinical Outcome and Phenotypic Expression in LAMP2 CardiomyopathAbstract

Hyten et al. 2006

Impacts of genetic bottlenecks on soybean genome diversity
Abstract

Wang et al. 2009

SNP deserts of Asian cultivated rice: genomic regions under domesticationAbstract

Li et al. 2008

An ancestral turtle from the Late Triassic of southwestern China
Abstract

Paterson et al. 2009

The Sorghum bicolor genome and the diversification of grasses Abstract

Kim et al. 2008

Regulatory Genes Control a Key Morphological and Ecological Trait Transferred Between Species
Abstract

Maynard Smith and Price 1973

The Logic of Animal Conflict
Abstract

Boitard et al. 2009

Detecting Selective Sweeps: A New Approach Based on Hidden Markov ModelsAbstract

Moyle et al. 2009

Explosive Pleistocene diversification and hemispheric expansion of a “great speciator”

Abstract

Patterson et al. 2006

Population Structure and EigenanalysisAbstract

Payne et al. 2004

Large Perturbations of the Carbon Cycle During Recovery from the End-Permian ExtinctionAbstract

Bouchez et al. 2002

Marker-Assisted Introgression of Favorable Alleles at Quantitative Trait Loci Between Maize Elite LinesAbstract

Bilkard et al 2009

Divergent Evolution of Duplicate Genes Leads to Genetic Incompatibilities Within A. thaliana Abstract

Cartwright 2009

Antagonism between local dispersal and self-incompatibility systems in a continuous plant population

Abstract

Briggs et al. 2007

Linkage Mapping of Domestication Loci in a Large Maize–Teosinte Backcross Resource
Abstract

Ward et al. 2009

Abrupt and Gradual Extinction Among Late Permian Land Vertebrates in the Karoo Basin, South AfricaAbstract

Vigouroux et al. 2008

Population structure and genetic diversity of New World maize races assessed by DNA microsatellites
Abstract

Saishho and Purugganan 2007

Molecular Phylogeography of Domesticated Barley Traces Expansion of Agriculture in the Old WorldAbstract

Felsenstein 1985

Phylogenies and the Comparative Method
Abstract

Foll and Gaggiotti 2008

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective
Abstract

Namroud et al. 2008

Scanning the genome for gene single nucleotide polymorphisms involved in adaptive population differentiation in white spruce
Abstract

Payne et al. 2009

Two-phase increase in the maximum size of life over 3.5 billion years reflects biological innovation and environmental opportunity
Abstract

Miller et al. 2004

Sequencing the nuclear genome of the extinct woolly mammothAbstract

Weber et al. 2008

The Genetic Architecture of Complex Traits in Teosinte (Zea mays ssp. parviglumis): New Evidence From Association Mapping
Abstract

Sepkoski 1997

Rates of speciation in the fossil record
Abstract

Le Thierry d'Ennequin et al 1999

Plant domestication: a model for studying the evolution of linkageAbstract

Payne and Finnegan 2007

The effect of geographic range on extinction risk during background and mass extinction
Abstract

Ma et al. 2006

Genetic Structure and Evolutionary History of a Diploid Hybrid Pine Pinus densata Inferred from the Nucleotide Variation at Seven Gene Loci Abstract

Signor and Lipps 1982

Sampling bias, gradual extinction patterns ad catastrophes in the fossil record.
Abstract

Sjodin et al 2005

On the meaning and existence of an effective population size
Abstract

Peters 2008

Environmental determinants of extinction selectivity in the fossil record
Abstract

Peters and Foote 2002

Determinants of extinction in the fossil record
Abstract

Organ et al 2007

Origin of avian genome size and structure in non-avian dinosaurs
Abstract

Organ and Shedlock 20008

Palaeogenomics of pterosaurs and the evolution of small genome size in flying vertebrates
Abstract

Raff 2007

Written in stone: fossils, genes and evo–devo
Abstract

Sahney and Benton 2008

Recovery from the most profound mass extinction of all time
Abstract

Axelsson et al. 2008

The Effect of Ancient DNA Damage on Inferences of Demographic HistoriesAbstract